Scaffold Ga0114963_10037333

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10037333
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3173
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048306	Metagenome	148	N
F051912	Metagenome / Metatranscriptome	143	N
F073545	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_100373333	F048306	GGAG	MTREEAEFISKLCNNSSVTWIKTHIEYQKKFVDPSQWHEDTSGYQKGTALPHGSQIEGNDLCKRAQAFKN*
Ga0114963_100373337	F051912	N/A	MTEREKAISLVDEFYQYTNTNSRESAKACAKILAKEVLVKLRYYSAPKHAVEFWEETVLEIDRVPAFKQ*
Ga0114963_100373338	F073545	N/A	MTAKEKAVELYNSYFDLGRDFTRGVSMREFAKQCALICCDQVLGDMGADRGYQYWKEVKAEIEKL*