Scaffold Ga0114963_10026096

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10026096
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3872
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049582	Metagenome / Metatranscriptome	146	Y
F050331	Metagenome / Metatranscriptome	145	N
F066729	Metagenome / Metatranscriptome	126	N
F091941	Metagenome / Metatranscriptome	107	N
F105052	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1002609610	F050331	AGGAG	MKLKSIKRKADRAAAIQYLCQKDFEFINEGDGAGLELLDSILENGFKGYINYTDRELNDTIAERKEMERMGI*
Ga0114963_1002609613	F049582	GGAGG	MFADKTKIHQELSNRFKNESDLTLSMMKRAISDLDISNPEALDVMYEDVMFFTGDWPESEGWGSSDSAICVRSVKESLISNGYLKEAA*
Ga0114963_100260964	F066729	AGGAG	MTIQVPNNSLWQYIEKDHIDSNIKKTIWEEFVLSHQEEFAERVSELSEEMWNNYNQGAE*
Ga0114963_100260966	F105052	AGGAG	MSHLDEKQKLIDIISGKEQIYSQMVYTMGFQKLVKATSKEEAISKFQNDHPDVIADNEQVDCDDDGEVIEMDMEVSELYGE*
Ga0114963_100260969	F091941	AGGAG	MKILFDMSRLKREFTRESLQAWAEFLAECNRANFYFKADGWSQGELVDFDESGFAELELRWGNDHDDGENYSNTVEYDAEEFYHDFDKMKIKNKETA*