Scaffold Ga0114963_10024518

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10024518
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4003
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F017469	Metagenome / Metatranscriptome	240	Y
F024719	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1002451811	F017469	GAGG	MKSICQFCGWEIKKVEWYNNYDKSYACDDCLMNKDIEHYKEREGASI*
Ga0114963_1002451813	F011756	GGAG	VSEPRYLSGDEYALSGGYEELINCKECAAEFDRTEYQSDTCSECEDKRVAREKENK*
Ga0114963_1002451815	F024719	AGGAG	VSNVIELPNRGKITVVFYEVSDSKNIAVWGGESPREALDWYRRSPTGSKIWVSQYETDEEEARLVLDLIEITPIVLATITDSIDRWSK*