NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10008674

Scaffold Ga0114963_10008674


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10008674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6907
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003863Metagenome464Y
F004110Metagenome452Y
F014590Metagenome261Y
F058947Metagenome134Y
F083706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1000867410F058947GGAGMISCELQDLEDLMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKIGRG*
Ga0114963_1000867415F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIITGDSRLTIAVHTRANAVPDVAGRTDYESADESYNGGEA*
Ga0114963_1000867416F014590GGAGGVRTRHLQLVSSTHSDTTIAKSNVPSLFGPVRAGLTTSQRTNDQVLTELLNCLESVVESLNYKSFTLYDTLNTAMEEVFAAVCDTQIEEVGTDETP*
Ga0114963_1000867420F004110N/AIGCYQTVTELHPVIYDLVPSVANTIHRRYKNHVERDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMISDGQPKGSSSPAEGGNLLANLIDIKKGYLKLEQDDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWA*
Ga0114963_100086747F083706GAGGMKYLTPRGWLVAGILIGLSIWGLWEISSHLLWTGTGYEWCENLLTCEGEGK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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