Scaffold Ga0114963_10000660

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000660
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23243
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (72.88%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F036210	Metagenome / Metatranscriptome	170	Y
F037567	Metagenome / Metatranscriptome	167	N
F040587	Metagenome	161	Y
F053106	Metagenome / Metatranscriptome	141	Y
F064189	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000066021	F040587	N/A	MNEKRVLTRNGTMIQWVGVLIALLGLAYNGVKDYQTGNIKIPELTKVVYPVQYCLMAYDPNVNKVFYQHEDGKWYEYAPQQRKYK*
Ga0114963_1000066022	F053106	AGGAG	MAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDTIDEHFYVDEQGYRDYISATPKTNVIATKSIVRAAGWELSRADDE*
Ga0114963_1000066025	F000325	AGGAG	MKVANGNDKLGKGCLVVSRPVGDTCPPTCVYLGDGCYAEQSEKMYPNVRPAGMMNLITEKNRIRAMILEAIRKEKSIRWHERGDWFLNGELDLDYLANVTWACESILADGTSLPDMWFYTHIYDDRLVSLEKYMNVYASVHNNEDMGAALAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDTKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH*
Ga0114963_1000066028	F006543	N/A	MITMQKFAFSVDIVATELDRDSVVESLTAALNDTLPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTADAAGDSANPKKIKETVEA*
Ga0114963_1000066029	F012108	AGG	MINLQLTVREALTLATHSSLSGDMYDKIVTAFEVALGVNQNRTVTITGGMALDNRIHCIKAIRNHTGWGLKEAKDWSDTLVGGWKYDTFVPAAANVRNSITLKTPEAAENLLRDLVDKGCEGFLS*
Ga0114963_100006603	F036210	GAGG	MKNKVLTEKNRIEIQRKYIDHILGSLDFIEIKDRLRDYLEVEKDHSSNGALESEIRHEAPDVLVDNWEDMSGPATLTKGGR*
Ga0114963_1000066031	F064189	AGGA	MAKNFKDLISADPKTMTREQAMIYIINFFSSRMMTTSKKHVDKAKELISLHEISTSELVDKYVDLVYENS*
Ga0114963_1000066032	F037567	AGG	MEWISFFGPRRPINGQKVYYFGEYIGVWQGRYEIHKDDPVSEHILICEESPGIVDRMDAPYWQPYEGQPKPLPPDKPYPKDYPHG*