Scaffold Ga0114963_10000456

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000456
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27309
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (58.70%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F006138	Metagenome / Metatranscriptome	380	Y
F009142	Metagenome	322	Y
F010463	Metagenome	303	N
F012113	Metagenome / Metatranscriptome	283	Y
F012433	Metagenome / Metatranscriptome	280	N
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F025225	Metagenome	202	Y
F025739	Metagenome / Metatranscriptome	200	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000045613	F005702	AGGA	VIFGLLVFIGLVILQGVRLFAKHIDQQNYERRRFYLSVAADLDRLDKIIAEGNKPKQPELVLPSKNWVGRN*
Ga0114963_1000045614	F005846	GAG	MTSFPLPARPVGSVVPASHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGQFASNHNLMADRILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVVWEGFVMKALNDGKYPFITHPSYCSHAWQKQRIRS*
Ga0114963_100004562	F024265	N/A	MNEAYTTPDAKAKSILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE*
Ga0114963_1000045620	F025739	GGA	LESLLGGQKTEPKQKKNETMKKLLITVVSVIQKWTLGFIAASLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKAIPDEYRQLYGQTLKTISRLVEENERLRKRLDQ*
Ga0114963_1000045621	F012113	N/A	MNQILTFVQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKVVSFLSRFSRK*
Ga0114963_1000045628	F025225	AGG	MIEIDLLNQAKFIHKLQQYQQVSKKNMADVINSKLGDVAVTAIGTTYRTNAAQIASELQRVEGKVVTKKVFKPFGLTKSGKIKKRKIGEYVVGYKAQSVSYAGTYKLVNWLLKNRGLPTLGKTKLGVGGLGMGTKPGTIGALARRLVAGRKRSINYIRNGWAAAAAVFGKRENLTRGDYSKESIKRLGGGTKADSEKAQMEGIIFNRAGDLDTRYYPVRKRAISGAAKVGMPGLLMAIDKVMKDMNVYLARKNKEESDKLGL*
Ga0114963_1000045629	F090073	AGG	MSDILDEELNASFVQPHKSFKGEQIAEYTEGSRLLMLQCKDKNDSSVYFVWSFLYLHLLLHKNKREAIKLAWDKDTFRERVLDWVADKTDEDRDIATNIVSTIIEDAGKARVSIVQSGIEGQASGNE*
Ga0114963_1000045630	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQSDPVTHIVREDGSKQITFWFNSGGSGSMAKKEMEAKWSEMTSDGEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPTNAKPELKRAILKAI*
Ga0114963_1000045631	F006138	GAGG	MPATTIGNAGLVFGLNTETIGLVQSFSETRNIEKNEIRNSTGDISAVGYYNPTTAYSLSVAITGANTSLTVGGAFASLANATTVGTCRIDSIALSKTNTGFVTLDISATGYPNVS*
Ga0114963_1000045632	F012433	AGAAGG	MSSDQVADLRERLARIEERQVNLIAVLERHTSEIAEWTGRMNGKVDTLERDAHTIKTKLWLVALVSGAVFSTIWELIKVRVLSR*
Ga0114963_1000045634	F014487	N/A	MPILLIALLLGSCSPRHTDNNALPRYSDMSAAEDAGRVKSQ*
Ga0114963_1000045635	F009142	N/A	MNNSVQINVEDALASLLSGISELNVYKTNKVGAKLFPYATISASISGQVLGNYTGVYEVDVSINYSDTAAKISQANFDAKYCSIFEAFYSETPTLFTKIQNNIVDTKVYTARIVGQNPTIKTAKRAWQRGLKMSLVCTPQ*
Ga0114963_1000045637	F005584	GAG	MAGTISTSYFETDLSYMIQDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASSISAPTIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0114963_100004565	F010463	AGGCGG	VNELVLAATIHRVKMCEDRIKEFEQMVTTLTAQMAHNRAELASKGLANLVMGTTTPLDIPKELVPTYGKYRARGNRTHAVVMKRWEIWKAQHESGLSLRDIARAWGCHPTSVLNAKNRKFKARKATGRNTK*
Ga0114963_100004567	F023585	AGGA	MSVKRLKLLEEFHAIVSKRLKDLFKDFDHAKRENYKDIISHLDYSHRITKELLERAKKYQKIDMEKAKK*
Ga0114963_100004569	F023833	AGGA	MKSHSEQVQDIINDAMRKAATLERERCAELVQRLSDGTEDQVIKEILNEVVTAIRRLSDVR*