Scaffold Ga0114963_10000347

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000347
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30839
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (25.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F091224	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_100003474	F055388	GAG	MVARSLTNQNRVLEGATFSWHIILKNKQTNYMAQNGVTFSSCQDVDSLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCIQNADEVQFEKIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMGTNVNITKNVHEEFARSNWIGGSGHKWIPISNGQSLISCATPDDQMFIVQPFEGTNEGSFNMGYVYVKLPVSQLNNIGLLSLDTLDDILVNLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGYWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNANDPTTWPRLVRVLPYIPVSTELGCKYIQNQAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNVQLVIPAACNLVPNYTPQYTPDCFVCSSVVTEPI*
Ga0114963_1000034751	F091224	N/A	MRSSIDNILNEIGLDTPDLAPMNRKEAIEMGLVKLIEKPKKCACGKSAYTSKSKCDSAIKHRLSAGFGGMGMLRAYECDIVRGNFHMSSVCVKYKR*
Ga0114963_1000034755	F039455	GAG	MARVHVNTGRYGDIICFLPVLLNEYKETGVKARLVISKDYASILDGVSYVEPLVFDGRFEDVSGAIAFAKTFSDDVRTSQVVGISDVIVSQVYGNSHAPKIICDSFQKDAWKLADKLELWPSQPQLVFDKRDKKREKRLYKYIPTLKPWIVVSTGGISSPFPYSDLLWEILNHSLKEFHIVDLAKIKAERMYDLLGIMDHPNTAAMILTDSGNLHLSYATKKPVHALVADSPTLWHGAAWRPSYASYTRYKNFPRDVTRILDLIRNPPAKPKHPDIVHVYSRLPNAAGEEKRRNDLAASTWNVGWVDCGLDDNCFVRHSANSIPNQKKEIPMIKEMIKFACCGRKDTDIVVITNTDICVTTDIIEKIRKAPLGYAFRHDYKYLDKIIPDDQIAGDKYPGCDLFTIPVGWWRRNHHLYPDMVIGRHSWDRIMRELIKLAKGQEIEKAIYHQRHDSMWEQTEHINSDLCNLRNGRLAREWLLERKMPLEELEFLNYEGKFKKPVRKR*
Ga0114963_100003478	F030662	N/A	MRLKNPNDAIPGGLWYQYTDDKEKTYRVNGMDLTFGRQFAQKVKNDMINKNVDVPENLEYLIEQQICKRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQKRREILNQVIG*
Ga0114963_100003479	F048735	N/A	MEYNGFNLRPPEDTTYGLSFLETSPQFMRELIAYRLTRGEFGRRERIKMGIKLENTTLKNPAQHMINCFQLIFEDDVLLHSQGIVNNYAVDIVDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNCTSTYVASTSLDASEDRLWGKVCTLYRVAMRNLQSKYGKDSSIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTHKWTTRTGVALHLSGEDSPNFKVPDAIIPPFDRFLTIEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTRVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTKEYSSSVGDVFEESIAMQLVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISSLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVEKHSSIVNELCSRLYFHKGRKVAVEKKLDMKKRIKKSPDLADSLTYAVEMLSKAGLEFTFEDDAKESLDILEIRDWEDRLIHSKNNSQEEVDNDDWGYGSSSVDPDGF*