Scaffold Ga0114963_10000274

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000274
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33900
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (69.23%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006255	Metagenome	377	Y
F007848	Metagenome	343	Y
F010521	Metagenome	302	Y
F014955	Metagenome	258	Y
F017107	Metagenome	242	Y
F017287	Metagenome	241	Y
F021938	Metagenome / Metatranscriptome	216	Y
F029048	Metagenome / Metatranscriptome	189	Y
F046243	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000027412	F010521	N/A	MKLTPAILKNLYSAVYCMKPFDRWNMPLPEEINFIVDKDPATMGTYLYDDGGKYEHIITISEARCGSIDTVLKVLFHECIHMSRHKTQRWTHYDKEFRNRAHRIAKELGFIDPLEL*
Ga0114963_1000027419	F046243	AGGA	MKHMTRSYPPENAMLRAHKESTLEKQQKKRQEHNPPLELDDSGILNKKANQRMKRKEALSKAMNKYHDPDIVG*
Ga0114963_1000027429	F021938	AGGAG	MLCPKCGYSDGNHVEAKKLTDEEFFMKWWTPTIGEEAAKASWLDKVAMKTRVAPMIIPDIPGHISMADGTWVDSRSKHRENLKRNHCIELGNDVPMQQKAPEMSRQSQEARKRQIAELAYAKLK*
Ga0114963_100002743	F007848	GGA	MKDFIGSCLLGALLGAMFAYGVPAKAQTYPVTSPQGYNMGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPQGYATSVVGNTGYTVPPSPSTPPSPRVLQ*
Ga0114963_1000027447	F017287	AGG	MDTYIRRVFEGEAPCDKCSQAEDCKENEWACRAFSYYVLHGIFQEYTVRQPTRELFERIFKDDDKALQNYLKSLKAKE*
Ga0114963_1000027449	F029048	N/A	MEMLSHIRDVIGDKAIVSTEPFGVDEERQLIAFEVNDLAAVIKDVIRTCADCCVSPIDREAILDLLN*
Ga0114963_1000027452	F006255	N/A	SELNQLMLEHEEFLESALDDMEFSNEYLTQEQVDCIRQACGKPRNNHVNPLLRDVINDFGAIFGGAK*
Ga0114963_100002747	F014955	AGG	MEMYERYIVAATGLGYLVVGLAQYFKGSTPNAFIWLGYAAAQIGLWMNLK*
Ga0114963_100002749	F017107	AGG	MTDYSENYLKIQQLLKSYHNATLKNQYEKATLIAHELAEETIKLEFSTYDQVRKQWLS*