Scaffold Ga0114963

Basic Information
Taxon OID	3300009154 Open in IMG/M
Scaffold ID	Ga0114963_10000257 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009154 Open in IMG/M

Scaffold ID

Ga0114963_10000257 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34931
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (79.69%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

34931

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (79.69%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013870	Metagenome / Metatranscriptome	267	Y
F021754	Metagenome / Metatranscriptome	217	Y
F023321	Metagenome / Metatranscriptome	210	Y
F024533	Metagenome	205	Y
F047012	Metagenome / Metatranscriptome	150	Y
F053899	Metagenome	140	Y
F054799	Metagenome	139	Y
F055551	Metagenome	138	Y
F081259	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000025722	F055551	GAGG	MNILKANTNKPWMSNEYETPIPENEEMWSQRIIDEVIEDLFNEMDEENNGNKKEKD*
Ga0114963_1000025723	F053899	GGAGG	MTKEFDKIMDRIKNLTEYEVMVPFPKEFEFGGPVPYDMSISGDKAFVKVIAESIEEATFKANEYFESKYK*
Ga0114963_1000025726	F024533	N/A	MPVQKTCPTCNITHTKRGPYCSRSCGNIRVHSEEDKAIRSQKLTEYHQTPEGAATREKSSRIMTAKRKGEDWEEISSDEFAVNIPDVTDYVADYDNTWERAEKW*
Ga0114963_1000025727	F023321	AGGA	MFLNQPQFPVFYTFNDLNRKAEEAAVKTIDFNKQFIDNTLAYFDSITDNQFTTYTKKMVTFNQNTAEDAKKILKSESTKTKAGN*
Ga0114963_1000025728	F081259	AGGAGG	MLNKLIQWFIRPQITEIEQYISAHNPKNTADVEMLINEFNYKRKLQCF*
Ga0114963_1000025732	F047012	GGAG	MKRLLFFVIATLMAVAAHAESYRLPFVELQNGVVKIPFVENEWVLGAKRADWLLYLEKGMFSKQNQPMYEFHAVTLYKKPHHNDAIDTDISKIYTYGVLNCQEANLYILFEWYVDVDENMVFKGSHEYGAYTVEMLTPTTARNDVYNQICKDSV*
Ga0114963_1000025735	F021754	N/A	MKNKDYTDIAVQKEVLLDYLQVMVVMGDWHGVSDVANDLRELEAKNNNNYKSK*
Ga0114963_1000025748	F013870	GGA	MSNEFKKQCGAGYYWCSTDKICKPLQEDGMAGGAPTNAVGGGQVAGIGVGLQGEPGRKKNKIATFISYMSRKIPK*
Ga0114963_100002579	F054799	N/A	MKDLLNLLPKLLEMMPGVVKFLKYIPILMVLAGIGYGVFYWSQNYKDPFKCVDNEIYQQVRVDSNVYQFVGGYCVEGVDERK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114963_10000257

Overview

Ecosystem & Geography

Associated Families

Sequences