Scaffold Ga0114963_10000239

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000239
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36211
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (62.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F004010	Metagenome / Metatranscriptome	457	Y
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F037193	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000023939	F012569	N/A	MSRALDKFQGQYGFSVGTQGTAAAGYWAIQMLSDTTFSAISGRYDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG*
Ga0114963_100002394	F037193	GAG	MQVKKYWDNDGSRWKLWVEAGGFRTEIFCYDTTDANAYAKCIRELVSHAYQMQSV*
Ga0114963_1000023940	F010603	AGGAG	MANEFVRSTRKAKGKALRFDTQNQTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0114963_100002395	F002826	GGA	MEVEAKNRLKWARDILLNARNKLAVERDRASHGHAIDIIQIIALVDAAALVCKEITGDNNENTRRDSNAG*
Ga0114963_100002396	F004010	AGGAG	MPLGSNVSKNMHELALDNKKKGKARGAGGVPRSQKQMIAIALSAAGKSNKSPRKFKAKSGM*