Scaffold Ga0114963_10000144

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000144
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44461
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (65.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001091	Metagenome / Metatranscriptome	781	Y
F014362	Metagenome	263	Y
F017642	Metagenome / Metatranscriptome	239	N
F100418	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000014421	F017642	AGG	MEQRRNFLKGAGIIGAFVVGAASYKQVKEMATEHKDISHKEMATEHKDISHLAPPINAITIQFTGAYGEKPKAPEPTMGQHTFYVNGWNEEVTHRVSMTVGKDNRLWMKIGDEWHRVAIES*
Ga0114963_1000014427	F100418	N/A	MLKRDKNFRISKQTKRIMATFVDPVARHAYKNAMIEAQLVGSQVFERKKKLHEKEPA*
Ga0114963_1000014432	F001091	N/A	MLQTKKENMNIREVAKKLAVEFKMPRADRYDLYLREFDKQVEVLGWVQDPTADMNDYRGREMLFPKRWVTIGVLPERTMVNV*
Ga0114963_1000014439	F014362	GGA	MLKEGVDYNFINFKDSDLTGIELLVEEYKGVIYHYHKAKIVEEGEFARLQFGYTIVHPGEQDIDDLTNDPKLHTIMGDILSVIITAQNEQIRNDNTKELDL*