Scaffold Ga0114980_10373970

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10373970
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 820
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004638	Metagenome / Metatranscriptome	429	Y
F018351	Metagenome / Metatranscriptome	235	Y
F021733	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_103739701	F021733	N/A	NITLTTATGAQFVFPIKPEFPTAGGSGVDAQTVSFTFTVTNGNVTETFS*
Ga0114980_103739703	F004638	AGTAG	LVELAIATQIPMSEWVDADDILTAIEVLEARYGK*
Ga0114980_103739704	F018351	GGAGG	MANETIAYNKSDLRDIYKAFKLMDDQATEEARTQSAALAYFASEEIKQAASTRTKSGKVAQRVADGVSISKSSKIGEFRYGFARQKFSGG