Scaffold Ga0114980_10215427

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10215427
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015702	Metagenome	252	Y
F046686	Metagenome	151	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_102154271	F015702	N/A	EVMTIKEIELEYTVYNLVKLSRKVYGDNADEYLAGRLESIITYKQMKALIDSLKEEVSE*
Ga0114980_102154272	F068766	AGGAGG	VSEDNVVAFHTKNKLVNFYEIATEEGNAIWGGEDPHSAVQWLRRSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVYAVLAGAQ*
Ga0114980_102154273	F055450	GGAGG	MEAENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRIRTADGRGAPVIKDHLNEGTDEGNDGGEA*
Ga0114980_102154274	F046686	GGA	VRAGLTTSQITNEARLTELLNSLESVVANLNYKSFTVYDTLVIAMENLRVALSNIATDEDFTDTV*