Scaffold Ga0114980_10135253

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10135253
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1464
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_101352531	F044916	N/A	MGRKKPDKSRIEKGLEKEEETFALMAKKIVDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLIKK*
Ga0114980_101352532	F064403	GGAG	MINPRSKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCKLYSEKYETNPRYMAEQFEFKF*
Ga0114980_101352533	F036564	GGAG	MKMGRVCLDLNYIVDMDNQEMVERAVECLYEDLMQGVKYGNITNWIDVIEDKNAKEDMIPEFLLEKEND*
Ga0114980_101352534	F032548	N/A	MKHNQEMEKAIKLLEELVIQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK*
Ga0114980_101352535	F027756	N/A	MKLKDLIDRKILYLNFPINRYVIQEGKVSEISPSEKCIKINNDWHLISNIRIIELFSEKERPALGFN*