Scaffold Ga0114980_10107364

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10107364
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1668
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F049582	Metagenome / Metatranscriptome	146	Y
F068762	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_101073641	F049582	N/A	YYNKRRTMAHKDIHTVLATRFANESDLTLSMMTRAISELDISNPEALDVMYEDVIFFTGDWPETEGWGSSDTSALIRSVKETLISHDYLKAAA*
Ga0114980_101073644	F016365	GGA	MVMHNNQRKTMNATQKLILATAAVIYGMTAPLPANEIVKETQDAINKWYDEVSTSVSQDVTALGVTVSNIPTNISLGVSSFWEETKQFQKDSWNETLKFEQEKQNWATIKGWFTPATEEVKK*
Ga0114980_101073645	F068762	GAGG	MLRQQDLYHLYAGIRERLHEIMIERHPDPMQSQVRRELAEELLEYLHNNEEGLKTMHDYKEQWTRGENE*