Scaffold Ga0114980_10103589

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10103589
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1701
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014503	Metagenome / Metatranscriptome	262	Y
F053829	Metagenome / Metatranscriptome	140	Y
F085113	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_101035891	F085113	GGA	MYSYSDEWKKFKPPDDVLQRCHQVLITDNDAEAAGEPFWKIKKWCLAHCHSYIWFDITDVSDASGLWDEIAAFWFHDEKDAVMFTLKYKGGK*
Ga0114980_101035893	F053829	N/A	MEVTITLPSIGEVLATRARAVFPYRINFQTVRLNSIEEMKSWCHDNCKSLWRCESYHALYFQFEDDYDATMFMLRWATAEGNELK*
Ga0114980_101035895	F014503	N/A	MDLIRKLKPVKFEWNMKKTIVHHWSFHDGVTPINPGNQFGETVLPRGWTCWVYPRDDQVFVEWMDRMCPTADICHRFNSGDPMYTVNISNDKEAVLFQLKWM*