Scaffold Ga0114980_10079503

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10079503
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1967
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → unclassified Saccharopolyspora → Saccharopolyspora sp. K220 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040536	Metagenome	161	N
F041090	Metagenome	160	Y
F055552	Metagenome	138	Y
F090097	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100795031	F055552	N/A	QEYWQRKADLCQKIGIEQLMAGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWASLIASGVMLAGEGESNE*
Ga0114980_100795033	F040536	AGGA	MDELGKVIRFHPVKSPLSLFYEVIEPDGETRWGGERVFDALSWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN*
Ga0114980_100795035	F090097	GAGG	MTIRSKRVSGKQAIHYRNYRRVRDRALARLSQAYPETYKELLELEKVSDDTTGAKWVDIDGTTSLVVGVRSGNREEAVIIESAGYIAEGEGDNE*
Ga0114980_100795036	F041090	AGAAGG	VRSETTSVSQTNIVKLSVIRSERQRASSPFGPVKAGLTTSQRTDRDQALTELLSSLENVVADLNSKSYTALDTLAIAIQGARVALSATTTDEVGTNLI*