Scaffold Ga0114980_10071405

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10071405
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F010320	Metagenome / Metatranscriptome	305	Y
F030760	Metagenome / Metatranscriptome	184	N
F059953	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100714052	F010320	N/A	MKTNNENAFINDAYDEESKLHIEFMSDVKKHDYSYMMSDDHSVYMNGNSKEKQIKEKLHALIGICKYDGHDLLDEVISSVPQRYNDVDKNGNDLTHRVIRGWFEPYVFDNYKL*
Ga0114980_100714054	F059953	N/A	MNLELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFEKELSKSVQLLDKIQTALHNEVKVLDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR*
Ga0114980_100714055	F002092	N/A	MRTTNQKAIEYLNGNPIVANFINKLNIQRKDHYVKADMVSQWKELTVEVGQKYIRLWQGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL*
Ga0114980_100714056	F030760	N/A	MNYKTMHDIEIVSKSGDTITIKGLSYSTIMNIASKNTKLKSITITKQYEKKIK*