Scaffold Ga0114980_10063128

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10063128
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F078623	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100631281	F013524	N/A	VVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSREMVRVNDHMDADHITIQRYKNKLEKCQLKLSNYEPF*
Ga0114980_100631282	F008688	N/A	MNRFNKIMLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLAIEKVYLKKGNAQKYCDMYKDSHNYSVEERELTE*
Ga0114980_100631283	F007859	N/A	MKNLLIILLLCTGCTSGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIEASTNSVYVIHTNYYRAYYNMGGKIIKTTPNK*
Ga0114980_100631284	F010081	N/A	MQDKINDIITEYSEKIRGVDKTKSIPMVVKELDVIVYDMYRQLYGLRDIRSSNYNLNSFTAENKKGHCS*
Ga0114980_100631289	F078623	N/A	NIHDKSSREFVAAYGNRHDVTVLNDDGYSVRLTFPYISAFPTVVIPTPSYENTDENGVITKIEGSIEYLRAPEDWNTVQQRIEYWENKVPNWKQTDSRYKQ*