Scaffold Ga0114980_10057875

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10057875
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2342
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F068428	Metagenome	124	Y
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100578752	F068428	GAG	MLEDLQLPKRQTSCRIRTIKADLSDKDKTIFETAVMSPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD*
Ga0114980_100578756	F035668	AGG	MTCNNCQDGCKCARVNSVNIFSRDYKAGKSEGQRNEATRTSDALIELERSGVITNAQMQAVLDLILEKLTDAMDIP*
Ga0114980_100578757	F059760	GAG	MILKTIKQLSAKGQTMSNPETKEQLVSNTADAITSAIQNSRDNAVEAVISIVESYKKLQLPAFPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE*
Ga0114980_100578758	F077016	AGGA	VPTNNAENVREFYRRQGEERERTRLIELLKEQNVIRNCAATGKLVFVNCNTLEVLYLKEISDE*