Scaffold Ga0114980_10054044

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10054044
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2430
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011208	Metagenome	293	N
F019450	Metagenome / Metatranscriptome	229	Y
F036596	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100540442	F036596	GGA	MNKTKTWKIGECCTGGIIQAKISENVYFPGSTTVKILIKDLKTKEILDSQVFGRIHESRLESFLHDMTTSYHASNVMEWVKANAFTHRVLVAMEGAQS*
Ga0114980_100540445	F019450	GGAGG	MKTVYVVYNSIGQFQARFLTWRSALRWAIREGMEWTAVIRKEVGE*
Ga0114980_100540448	F011208	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWDKFRRERQTEAQASKR*