Scaffold Ga0114980_10051340

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10051340
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2500
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F017826	Metagenome / Metatranscriptome	238	Y
F074879	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100513401	F017826	N/A	MDKLKRIWNVVLVPTAFFLGALNMWIGETAVGCMFILFATNETINNDNKTR*
Ga0114980_100513402	F013759	N/A	MTIKQDSMKLEFGLSVFSRSETLLGLEITTHNGIMVGEDHDLYDQRIVEFSIGICFAIFTIGFVSKGQKIDTPDMDNVQRAMKAFESELDK*
Ga0114980_100513405	F074879	N/A	MNVTINDIKDIERELSITLTDVQRNTILNEYHTIIGDRAEGWDELIELLIIKQATIQILKDKNK*