NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10038028

Scaffold Ga0114980_10038028


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10038028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2953
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001754Metagenome / Metatranscriptome641Y
F003291Metagenome / Metatranscriptome495Y
F003542Metagenome / Metatranscriptome480Y
F010916Metagenome / Metatranscriptome297Y
F031098Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100380282F001754AGGMVKTTYLYVVKGLVRCLPQTIKNYNMNTVYNNFAASKMSNNPKFEVIVSFTDFLGKTHNIVCKSRTKLKEANEFLKMFKSETVRINSILSEYPVVMGKFPKKYHSEIKRELASAGFSTVSNFLIGK*
Ga0114980_100380283F003291N/AMNTKEINQKLVSVFTQDELAALMTAMAGYVNIKRKQGRSTGIECVVFNKVCDALLLSNELNAVVIDTKPDSNAPMGSAAYKAYEAMYDSDVKAHS*
Ga0114980_100380285F010916N/AMIVETIKSDLYELIEKHDWSYMMSDSHNVWEAGMKVDKEIQAKIHALCAIHREDADELYIFTKYIAGPDYTDYDKNGNGLKYRTINSWFKPYIGE*
Ga0114980_100380286F003542N/AMNTMLKNVKNPVQFDYDLFDSKIGYDSVNKKYLIRVYDYLVFEMNTNPAPKWTGIMVKMLGDNPNNCNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGKNWDRFVSDEDWSWFIMRTGSCERSYIVK*
Ga0114980_100380287F031098N/AMKTYYDIAIHTATNDVVNIKGVSYSQMMRIANDNPTLLKVEIVKEYSKRISKY*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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