NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10037722

Scaffold Ga0114980_10037722


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10037722 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2966
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F008552Metagenome331Y
F009750Metagenome313Y
F024557Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100377222F008552N/ALIKKNLQLCPRDGRYHPYKFFAIFFILENPTITRYNMSVMIISFEASASIDTTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDTDNVKLLQGAFHNIRRIICIPDVEKNKFTYVFKRNFESGTTKQFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQFIKHQENMVN*
Ga0114980_100377223F024557N/AMEPTVWIYFSKTGTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKSSMHFFIYEWDNSQKKRRTVFESYKKELVLMGMVKHIDKIPLPITQKILSMYVNDAEELELEKNANS*
Ga0114980_100377224F001561GGAGMQTREQKLVYLRKTIETLWHGVSDSKTGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPSSTHHSLISVCEKSGDKIRAIGYCKMTLARFPNDPYTKSKLEVLTKL*
Ga0114980_100377225F009750AGGMLKYAIFETSQTMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTVSIPRNLGDDIWDRFKTEFEGNYSYNSF*
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Institute for Fundamental Biomedical Research
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