Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10035598 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3064 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007911 | Metagenome / Metatranscriptome | 342 | N |
F015449 | Metagenome / Metatranscriptome | 254 | Y |
F057981 | Metagenome | 135 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114980_100355982 | F057981 | N/A | MSEEALLQELDNSLISPDRYFKNQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKRAIRLAWDKDAFREKLMDWIAEMSEEDRNTASLMCSSILSEANKARVNVIPSAIAAPPGNA* |
Ga0114980_100355983 | F015449 | GAG | MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFNTGGDQDAKAEMERTWTDMKSEPEAAIRYVRAALENRETLLSLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL* |
Ga0114980_100355985 | F007911 | AGGAG | MPAVTMLDRLIEAAFQELLTATVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSIEPEADDEERTMRRTYKLAVIAQPNSIAS* |
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