Scaffold Ga0114980_10034295

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10034295
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3127
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034110	Metagenome	175	Y
F053984	Metagenome / Metatranscriptome	140	N
F057210	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100342952	F034110	N/A	MEIMTLPQRTTEQLHQQGGQLLMQCFEIENSTNCYGQIPRRTNAPDYLRAKRKALSIAKKYKDTPLYLHLKSNL*
Ga0114980_100342953	F057210	N/A	MMHNTDKHINEIMTQIGEIVLNAENRENLTKMDKLTQDSAKILVKELHLCILRHTYRVDNIRHNYDTLEDLL*
Ga0114980_100342959	F053984	N/A	MENQIIPTENAAVSVANEITNFAELVSKSTALDKLDQVLTLTAEYIELEKPSESFRGIYIGTQTMHITDKVTGEEKSMDAVRFLINKQVFINAGVVLVNEIKRAAVTVGTPVEITYLRKEGNTKIYQVTLLG*