Scaffold Ga0114980_10030906

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10030906
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3313
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F006135	Metagenome / Metatranscriptome	380	N
F016253	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100309063	F006135	N/A	MSVRIKIENQTEVPVLVALFEQPKCNDHPSRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGVAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE*
Ga0114980_100309064	F001259	GGA	MNRIGPDTVAFIYVHKTNGTIRVESLDTARRVDNSPEWKHVATINPHVVLESILRATIKDRNKIIKHLLT*
Ga0114980_100309067	F016253	GGAGG	MSDKIKSFIDCGTGVYSISKKEAGEIHKAAKKVKNHEVSYWTRNRKNKESK*