Scaffold Ga0114980_10030311

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10030311
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3346
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F047558	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100303115	F000332	N/A	MRWLLLLLLLGLVGAVAKNGCYVREFYGIGYTFHNPTGRHQEMVAWLDQNAGHCKSTEYIVIWNNLSEWAGAADSTWLRAKIVHGYKEALEREKK*
Ga0114980_100303116	F001538	N/A	MIETIRLFPTVQASGYPDRHDLAQKKLEKQHEMNKALELAKQKQVQLQDIGFEIYCKKVTQERIRMEIFTNRKLDVYA*
Ga0114980_100303117	F047558	GGA	MVTKKAPAKVAPVKRRVLKPKAEVIAAPAPKPEVKKDDSTIGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRTTLLAYGSKGRETLLDGYISTLFGKDAVRNTAVIAMMNGEVYCDKLVSSGKTSEWEEKQGVGFICRGSIPPEMGAFEGYISVGFTKEPQDLGAVKTRINLAATEMAK*