Scaffold Ga0114980_10023691

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10023691
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3821
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043358	Metagenome / Metatranscriptome	156	Y
F073557	Metagenome / Metatranscriptome	120	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1002369114	F073557	GGAG	MTDEQIDIMLQMHRYLMKCEIRQAFDKVSQNDRAAVLQEQFNDTKWDDFAKWLRIIRDKE
Ga0114980_100236916	F043358	GAGG	MKVYDYRIVEDLVLKTLKPHFFIQYYHLTEGKYHIYSSDTFQTLQEAQEAIRLIRKYKEPVYHYVE*
Ga0114980_100236917	F074866	GAG	MTEMKTCHNCKYYKDYDGVFDWIGSRIFGYPTLQKCFHPNRVKFVDYVNGTTCPYTTCSTERSYGNCGIMRNNWEAK*