Scaffold Ga0114980_10019827

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10019827
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4211
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026544	Metagenome / Metatranscriptome	197	Y
F030062	Metagenome / Metatranscriptome	186	Y
F048071	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001982710	F048071	AGGAG	MAFEQKPNSGAMFRNTQKKSDNHPDMRGDVYLDKTFLINMMDKSKGPLVKVSLSGWSKESAAGKKYLSLSASEPWEGGQSKPSVSDDDLPY*
Ga0114980_100198273	F026544	AGG	MRKVSIRTVENTIGLARSVANGTTKFPFMGYCADLMQKMLEEIKQARKAQEK*
Ga0114980_100198275	F030062	AGGA	MIVTILNMFALFVATCAVLIFAVVFAFFLFIMYACIHIGWGEIKGMSLSDLWNRIQK*