Scaffold Ga0114980_10019775

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10019775
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4219
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F017998	Metagenome	237	Y
F037728	Metagenome	167	Y
F084218	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100197752	F017998	N/A	MNLERLDLEKYEVLERERNNTIADPLYQQWMSELGVSSSYSDREGIIRANDLNNQYTYSVLAGNKNTKFSVSSILSILK*
Ga0114980_100197753	F037728	N/A	MEIHSDYFEVGYCSNGKDRYLIGLDIRDVVSFKPLEPKHYKMAIDKAPNEDGNYHIWLWDMGLNISYPMSIMPDNISSLSEFTSFLNHTLKLANNGDFSGDVGNRIK*
Ga0114980_100197756	F084218	N/A	MSDSHSVWEAGMMHEKSIQAKIHALVGIHREDGIGLCDEVKDIAGPDYTDYNEDGFGLKYRTIHSWFKPYIGE*
Ga0114980_100197758	F003291	N/A	MSTKEINEKLVSVFTQDELAALMTAMAGYVNVKRKQGRSTGIECVVFNKVTDALLLSNYLNATPIEVAPNSNAPMGSAAYKAYEAMYDSDVKAHS*
Ga0114980_100197759	F001754	N/A	MIDMTQYVNFSASKLSNNPKFEVLVSFTDFMGKTHNIVCKTRKKLIEANQFLKMFKTESVKINAILSEYPVVMGKFPKKYHSEIKKELASAGFSTVSNFLIK*