Scaffold Ga0114980_10019100

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10019100
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4299
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F006842	Metagenome	363	Y
F029021	Metagenome	189	Y
F065721	Metagenome / Metatranscriptome	127	Y
F075713	Metagenome / Metatranscriptome	118	N
F082173	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001910011	F006618	GAGG	MSKMKQHLESEIVISHFNEESTGWKRYIAFNYEGNEYELTLFWDSFDGYDIFWREPDSTPDWVVEWDSEAHNGMSFEHYLDDLTWENN*
Ga0114980_1001910013	F006842	GAGG	MKAIPAICGDHLVPISECDCVNYLQELKTSAERLVQLTREREEMK*
Ga0114980_1001910014	F029021	GAGG	MKDLCQFCGWEIARVDWYHRYNNKLICDNCVMDTMNEREREGAL*
Ga0114980_1001910016	F075713	AGGAGG	MKVKDVLEALNGLPLEEMVAIQWYTKDDIELNLQRKITREVWEEVCEYACDEPDMNDFSIPHLLERAERDSE*
Ga0114980_100191002	F082173	GGA	MAKVIKTHTLLADKSGAVWVEAELSQTQVKRVINSYKRAGIDLTAYGSPNQLMAQLRELEGAF*
Ga0114980_100191009	F065721	AGGAG	MTKYIANENGDWWEVVEGESLYLIDTANPDITRAMEEEDTNPYQDKFEYFIQEYGVKVGLNIKELSDARI*