Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10018917 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4322 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (9.09%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin316 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000785 | Metagenome / Metatranscriptome | 891 | Y |
F003542 | Metagenome / Metatranscriptome | 480 | Y |
F009005 | Metagenome / Metatranscriptome | 324 | Y |
F017485 | Metagenome | 240 | Y |
F093404 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1001891710 | F003542 | N/A | MSKVNFDYDLFESKIGYDSVNKGYLIRVYDYLVFEMNTNPAPKWVGIMVKMLGSNPNGCNPSGYYSSVRRCLKEIDVCKFDSVKRCMVKGKNWDRFVSDEDWSWFIMRTGSCESSYIVK* |
Ga0114980_100189172 | F017485 | N/A | MNNEIKTKDIVEGITFILMIVATIGMYCLLYEVKELRELTKGATNFRTIRK* |
Ga0114980_100189177 | F000785 | N/A | MNWAQDLLGPSKCTAIAFTWETDEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKLGYKNNPYELEARENEKLVKRAYKKRK* |
Ga0114980_100189178 | F093404 | N/A | MGEQIAYNKCPHSIVELHENPAGEYYPVCQPIETPGLIRGEYIPIGSRLQYPTKWGRKKASTHILEFKIEDCKRTLENTQKELDKLQACLSSVQTWEDDNKE* |
Ga0114980_100189179 | F009005 | GAG | MSEQEMIQMATLLGLDEELISYAKQIQSQLSGDGDTAFWIDCLQMAYNEIILST* |
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