NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10018917

Scaffold Ga0114980_10018917


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10018917 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4322
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin316(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F003542Metagenome / Metatranscriptome480Y
F009005Metagenome / Metatranscriptome324Y
F017485Metagenome240Y
F093404Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1001891710F003542N/AMSKVNFDYDLFESKIGYDSVNKGYLIRVYDYLVFEMNTNPAPKWVGIMVKMLGSNPNGCNPSGYYSSVRRCLKEIDVCKFDSVKRCMVKGKNWDRFVSDEDWSWFIMRTGSCESSYIVK*
Ga0114980_100189172F017485N/AMNNEIKTKDIVEGITFILMIVATIGMYCLLYEVKELRELTKGATNFRTIRK*
Ga0114980_100189177F000785N/AMNWAQDLLGPSKCTAIAFTWETDEESCGWYNWDETIWINLASCKRMITVQKTILHEWTHAQQTFRWYNHYNVKLGYKNNPYELEARENEKLVKRAYKKRK*
Ga0114980_100189178F093404N/AMGEQIAYNKCPHSIVELHENPAGEYYPVCQPIETPGLIRGEYIPIGSRLQYPTKWGRKKASTHILEFKIEDCKRTLENTQKELDKLQACLSSVQTWEDDNKE*
Ga0114980_100189179F009005GAGMSEQEMIQMATLLGLDEELISYAKQIQSQLSGDGDTAFWIDCLQMAYNEIILST*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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