Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10018504 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10018504 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4373
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4373

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (61.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F009397	Metagenome / Metatranscriptome	318	Y
F011368	Metagenome	291	Y
F023573	Metagenome	209	Y
F034468	Metagenome	174	Y
F095384	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100185041	F034468	GAG	MKLQPFYITYELVEEMLEKHDFHCIFELDAPMQIFTRLMSAEFYTTADIPGREAEFAQCWNLSEIYCPHEGIDRRSQYGMVD*
Ga0114980_1001850411	F011368	N/A	MNHSLTHKDIAGAHLLPGDHCLVTEHNRLILARVIKCYPASNGVQLQPLNSSAGGRRSRPSQKQIRRECYNVYRIAEVEITMSILRGAV*
Ga0114980_1001850412	F023573	N/A	MLTLISTTGEYNSTVVIKGPVGVIRICDLVWCTADRQDLLEVYYWESWAVLNGAYHCCFSIPGKVSLLKP*
Ga0114980_1001850413	F009397	GGAG	MTTYLLPQARNTVTGQTVKTQDLTGSRFLPSQRRLAQDMADQTAAKLSARTGDLWQGFLVEYQPSVRAG*
Ga0114980_100185047	F000354	GGAG	MTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHLMETEFDFEDVGSGEYEAFDAGVRYALTKMNIAFEAAGLDLQICSADLVESMGYMLVRTDDDPESFVKRVLKKPVLMVESWVD*
Ga0114980_100185049	F095384	AGGAG	MFHTDQQVEFKQTLRKFTDVAYNNYGNHAYAAGYLESMAVQMLAVMSKREQQGFIRAMQDAVKQQQNQAKELV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10018504

Overview

Ecosystem & Geography

Associated Families

Sequences