NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10018504

Scaffold Ga0114980_10018504


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10018504 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4373
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F009397Metagenome / Metatranscriptome318Y
F011368Metagenome291Y
F023573Metagenome209Y
F034468Metagenome174Y
F095384Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100185041F034468GAGMKLQPFYITYELVEEMLEKHDFHCIFELDAPMQIFTRLMSAEFYTTADIPGREAEFAQCWNLSEIYCPHEGIDRRSQYGMVD*
Ga0114980_1001850411F011368N/AMNHSLTHKDIAGAHLLPGDHCLVTEHNRLILARVIKCYPASNGVQLQPLNSSAGGRRSRPSQKQIRRECYNVYRIAEVEITMSILRGAV*
Ga0114980_1001850412F023573N/AMLTLISTTGEYNSTVVIKGPVGVIRICDLVWCTADRQDLLEVYYWESWAVLNGAYHCCFSIPGKVSLLKP*
Ga0114980_1001850413F009397GGAGMTTYLLPQARNTVTGQTVKTQDLTGSRFLPSQRRLAQDMADQTAAKLSARTGDLWQGFLVEYQPSVRAG*
Ga0114980_100185047F000354GGAGMTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHLMETEFDFEDVGSGEYEAFDAGVRYALTKMNIAFEAAGLDLQICSADLVESMGYMLVRTDDDPESFVKRVLKKPVLMVESWVD*
Ga0114980_100185049F095384AGGAGMFHTDQQVEFKQTLRKFTDVAYNNYGNHAYAAGYLESMAVQMLAVMSKREQQGFIRAMQDAVKQQQNQAKELV*

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