Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10018504 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4373 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (61.54%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000354 | Metagenome / Metatranscriptome | 1244 | Y |
F009397 | Metagenome / Metatranscriptome | 318 | Y |
F011368 | Metagenome | 291 | Y |
F023573 | Metagenome | 209 | Y |
F034468 | Metagenome | 174 | Y |
F095384 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114980_100185041 | F034468 | GAG | MKLQPFYITYELVEEMLEKHDFHCIFELDAPMQIFTRLMSAEFYTTADIPGREAEFAQCWNLSEIYCPHEGIDRRSQYGMVD* |
Ga0114980_1001850411 | F011368 | N/A | MNHSLTHKDIAGAHLLPGDHCLVTEHNRLILARVIKCYPASNGVQLQPLNSSAGGRRSRPSQKQIRRECYNVYRIAEVEITMSILRGAV* |
Ga0114980_1001850412 | F023573 | N/A | MLTLISTTGEYNSTVVIKGPVGVIRICDLVWCTADRQDLLEVYYWESWAVLNGAYHCCFSIPGKVSLLKP* |
Ga0114980_1001850413 | F009397 | GGAG | MTTYLLPQARNTVTGQTVKTQDLTGSRFLPSQRRLAQDMADQTAAKLSARTGDLWQGFLVEYQPSVRAG* |
Ga0114980_100185047 | F000354 | GGAG | MTKVNYDKFASFDINECCDHFDSEKQSNWKKIGKFIVADGQEYAHLMETEFDFEDVGSGEYEAFDAGVRYALTKMNIAFEAAGLDLQICSADLVESMGYMLVRTDDDPESFVKRVLKKPVLMVESWVD* |
Ga0114980_100185049 | F095384 | AGGAG | MFHTDQQVEFKQTLRKFTDVAYNNYGNHAYAAGYLESMAVQMLAVMSKREQQGFIRAMQDAVKQQQNQAKELV* |
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