Scaffold Ga0114980_10018143

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10018143
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4420
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011830	Metagenome / Metatranscriptome	286	Y
F029433	Metagenome	188	Y
F038591	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100181432	F011830	AGTAG	MATYKTQTKQLLNNYACISTLEANEIALGESVIVSGLAAPFSGTFTVLALPQYKFIGIDSITGELLFDENDPVPNQVLYACTGTSVEFVVDYSGTVTYTQTCSWITSAQILTYLGIATATADDTTFVTQCASAANNFAYRRRQECGYNDSLTTSPGGDVTLATIMLGSAYYRQRGGISDFASFDGMSQGSTNGLSPIVKQLLGVDRPQVA*
Ga0114980_100181434	F029433	GAG	MDYEVTSHRLSGYKFGDIIREANLGDLTTDLEFLVDSGHLSPLKPKKSAKTINTEQKD*
Ga0114980_100181438	F038591	N/A	MTTTARIEVVGVKDTINQLNKLDKELAKEFKASATQIAQPAMNAAKNMYTKVPLSGMSRNWKSQKRTPPQNIKGFDVSRAKAGVQMKFDTKRNAVGVILIIQKDQAAAIFETAGRANPNRLSNNLDPVRPGRTRLIGPAVYSARRGIEREMKSVIAEASRTVQKGL*