Scaffold Ga0114980_10015226

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10015226
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4858
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F048121	Metagenome / Metatranscriptome	148	N
F049419	Metagenome / Metatranscriptome	146	Y
F062446	Metagenome / Metatranscriptome	130	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001522611	F016774	N/A	MPLKKPKIEFLTDHLASLNHWRDQLLSLEKSYYSKDPEKERTIRNMINKYLDDVLAYNKNIKEKPKNKV*
Ga0114980_1001522614	F048121	N/A	MNTTQTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGAVVSVSAK*
Ga0114980_1001522615	F082109	N/A	MWTPIEIFCLTFLFNHSPMANERLSVKEVIENREAQLIIESVTLRNDSQTN*
Ga0114980_1001522616	F062446	N/A	MIPKPIRIIGFILYCLFWIAMAYLFVGCANTSYKTIPSAMSEDAQDYPTKYNMMDSPDGRRNPNAQINIFGATY*
Ga0114980_100152265	F049419	N/A	MKLPKLDLLDLATTYIFFGLIYGTIVALVWNYLFEPITFVHLSLLQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDSYLKEIQADLDKEAEEVERQYEDLDKKD*