Scaffold Ga0114980_10015199

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10015199
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4864
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001097	Metagenome / Metatranscriptome	780	Y
F001713	Metagenome	648	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014143	Metagenome / Metatranscriptome	265	Y
F079997	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001519913	F014143	GGAG	MNTHYLTQVRRLFSTYDAPPEVIRAYQKQWVKSVRQLGDKWLVAKPIERIQ*
Ga0114980_1001519914	F002487	N/A	MTRQDAIKDLSHGEYCCYCTEQKTYGSCCGENHFVPFEDLYEDDKEEMIKEYLSKGN*
Ga0114980_100151992	F079997	GAG	MHPIDLVNPPANKFKFCNKCETHKPPEGGLDMGHKWMCQSCWLKRTTGMHLKQNQLKNA*
Ga0114980_100151993	F001713	AGGA	MKFEFDTTTGEGSVIVTVVMTYETDEEGTYNENIDEVWFEGRNVMGIFTDQQFKELEMEGTMRLSSHLLAEADHARSVDYDMRAI*
Ga0114980_100151997	F001097	GGA	MTFNWPTNDSSRIRTLQGLRSERVDTQVQPKEIDDWLNQSLALVAGCVRGLGTNQRKVRYFAFEGQNDEATK*