Scaffold Ga0114980_10013999

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10013999
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5098
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001399910	F005502	N/A	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVTK*
Ga0114980_100139992	F043284	AGG	MKLTPVINKLNVTRDKALELIGKTIGLAAEAGEIINQARTNGDNIVDLCKEAGITEEVGKRYEKVAAAQPKLTNGEADPSLMRQTYLRIGIMPDPITVSEPSEPKHFLFPIMKARQWLASRGLKFISQDKELRKQFLAEAEPIVNAYKEMTQ*
Ga0114980_100139996	F007747	GGAGG	MKDLGKITFGKARPAPKQLLVDVTYDAKTAKALHAFGLKQLKKDEKAVIQYVIEKALEGFSKK*