Scaffold Ga0114980_10013284

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10013284
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5243
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001328411	F012569	AGGA	MSRALDKFQGQYGFSVGTQGTATAGYWAIQMLENTTFSAISGKFDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG*
Ga0114980_100132844	F001459	GGTGG	VRKLKAALAFIRAQEWVDEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGNAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAVLGYEDGSDDTIAN*
Ga0114980_100132848	F004760	AGAAG	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQFTPDSIKRATLRRKKYGE*
Ga0114980_100132849	F010603	AGGAG	MANEFVRSVRKAKGKAIRFDTQGQTNVIEFTASSSGGTVNTVATSPASLNVTLNGTSYRIALHT*