Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10013272 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10013272 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5245
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5245

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001338	Metagenome / Metatranscriptome	719	Y
F002038	Metagenome / Metatranscriptome	600	Y
F002413	Metagenome / Metatranscriptome	561	Y
F005588	Metagenome / Metatranscriptome	395	Y
F015597	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001327210	F002038	GGA	MTTTPAGIERIARTVSGQYALLLLLDGYPYVEMTARKHADFLSDLGMWKRKTHPSLARSQVRFFTLAPNGEIKELTFNR*
Ga0114980_1001327213	F001338	N/A	MTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKVWEDGTCSARLFFVDDKGFCLSKNFSTKYGKALAMLVGKYSGKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEANGEYNGRPQFKYKMTYPKGSQKPTVPDALPPEGVNF*
Ga0114980_1001327214	F002413	N/A	MTETPTPMAAPTLVLISGFARAGKDTLASGLLEWSTRPAEHINFADALKEAGNHFMDYLGLDGNFMAEDFKCENRDALVAFGKFARRLDKDVFARHFANWVPVMKHHDQVSPETVVCSDWRYINELRVCQDILWEKGWKVRTVYVSTAGIGPANDEELDSIAEIRASHSFDQEYIFKQNARQQIMSEGRILAKSWRL*
Ga0114980_100132722	F005588	N/A	MITTIRPNKMPALWWLVPWAYARTLHMSANAVKAYADRLDDILEIQRSLIEEQAADIRLLRQRVRDQDDAIIKGTAITPDAYPHE*
Ga0114980_100132723	F000957	N/A	MSNFQHLEGMRNLLLEIYEVNERIMTGDICSAKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV*
Ga0114980_100132728	F015597	N/A	MSDPIEDAFKSLHQGNLLAAKDARIKQLEERLEGMREAGDAIWYCVRHANRVDPAELIEAIEDWQEARNHG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10013272

Overview

Ecosystem & Geography

Associated Families

Sequences