Scaffold Ga0114980_10011574

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10011574
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5645
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F048101	Metagenome / Metatranscriptome	148	N
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001157411	F071966	N/A	MSLLGIYFDVKGYIFKPFYLVLGLLYFTILLALLGCLYIVLFIRNTLEIILKDIDNNRKKYKKLI*
Ga0114980_1001157415	F026210	GGAG	MSPILGANPIDYDAKYPQTADTSVNEDAKMFVMERNTGKEVMFQIDDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAIRFVQDISVKI*
Ga0114980_1001157417	F066486	N/A	MKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLDEIKSKKK*
Ga0114980_1001157419	F048101	N/A	MKKFKNIKDFLETCSEDEREYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC*