NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114980_10011574

Scaffold Ga0114980_10011574


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10011574 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5645
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026210Metagenome / Metatranscriptome198Y
F048101Metagenome / Metatranscriptome148N
F066486Metagenome / Metatranscriptome126Y
F071966Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1001157411F071966N/AMSLLGIYFDVKGYIFKPFYLVLGLLYFTILLALLGCLYIVLFIRNTLEIILKDIDNNRKKYKKLI*
Ga0114980_1001157415F026210GGAGMSPILGANPIDYDAKYPQTADTSVNEDAKMFVMERNTGKEVMFQIDDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAIRFVQDISVKI*
Ga0114980_1001157417F066486N/AMKNKTISKNDPYHLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLDEIKSKKK*
Ga0114980_1001157419F048101N/AMKKFKNIKDFLETCSEDEREYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.