Scaffold Ga0114980_10010437

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10010437
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5977
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F003393	Metagenome / Metatranscriptome	489	Y
F014849	Metagenome / Metatranscriptome	259	Y
F018352	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001043710	F014849	AGGA	MLTNWDLLAIIIALVGCLTVMCLFWKQNIEQQKEIRRLRNELRKALKV*
Ga0114980_1001043715	F000447	AGGA	MGFIEFARINDEGVSWVDLSEATPDELLTLELGLFQEGAL*
Ga0114980_100104373	F003393	GAGG	MAATIMNMEYVKVDILTSGQLEVDDLIQVGDEVVSIVEIISLADGYTIEIINDFGEREIIEVEEYQQFDLMMLQ*
Ga0114980_100104378	F018352	AGGAG	MGKFKESILGILTCSYCYGNGWQFAGNDIDYDVWACECNPYNIPADEIQEYHQLFKTKENA*