Scaffold Ga0114980_10010314

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10010314
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6021
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001031410	F066774	AGGA	MTQDNTMGNLETWVRQLNGELNVEVVAKTAVPPREDIVQPYSVFLRAYDKVGLCAATNKRRSSRCNIEFVFDGNTRRLKTVRMINQNEE*
Ga0114980_100103144	F062760	AGGA	MKQRDWIVSNQNMPQLMIYLEELIKQGKTPKVTIKEKADSNRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTIGEVQVPYVRSTTDLTVEEFSLYIQQIESYFSQLGWSNDE*
Ga0114980_100103147	F063689	GAG	MEILFRYLVFDDFGEPHRRFRTKHEAECYVANRPNHKIKRIPLPPKENVFDLIADEPLF*
Ga0114980_100103148	F104778	AGGA	METKAWLIEEFDSQGNLVWKMISFFEPDSLEWMRDLKGKRHNLTISELGVKNSKTINGIEKKYDSSKFVVGL*