Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10008838 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10008838 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6539
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (65.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6539

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (65.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F037027	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000883812	F005702	GAGG	VIFGLIIFVGLVIVRGLYMIAQHIDQQNYERRRFYLSVAADLDRLDKIIAESKTKPDLITSDKWAGRN*
Ga0114980_1000883813	F005846	N/A	MTSSIHPARPQASAVPANHEEFSDGFSIEGKLNGWRGLFNQKTGIGYNRHGNIASNHNLMVERLANAGIKAPYIDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVQDNKLLRFVQLAHHKINSIWEEMNYQNNKAGEVIWEGFVMKAMDDGKYPFITNPSYCSPAWQKQRIRW*
Ga0114980_1000883820	F037027	N/A	SRNSRSGIARDYANAGIENIEKIMKETKARMFPYDSVGGIYKCGGLSFVHGYGHAMHSGKQHADAYGDVIFGHTHAIDYFRSVSIDPRTGYNIGCLCNKTPEYNRGQLRRLRWQHGWAYGVIYPDKTHDVFQARQRGNKFYLPTNIKSF*
Ga0114980_100088383	F010463	N/A	MNNPQELVLAATIHRVKMCEDKIREFEQMVSTLTSQMAQNRTEMASKEAGNIVLGVTTPLDIPKELVVTYGKYRARGNRKYDVVKKRWAIWKAQYNSGLSLTNIAKAWGCHHTTILNAVNRNFTPRKATGRGKK*
Ga0114980_100088385	F023585	AGGA	MSVKRLSLLDEFHAVISRRLKDLFKRLSHAEVENFRDIINNLDYSHRITKELLKKAKEFQRRDIEAKKK*
Ga0114980_100088387	F033350	GGAGG	MSVDVDVPRVKWSMLEWKTMEEKPKNDEKVLMDIGGEVAVGRFVDGSFVSRSWGHSENDVRLWASWPVAPKW*
Ga0114980_100088388	F023833	AGGA	MKSHSDQLQDIINDAMRKAASLERERCAELVQKLADGTEDQVIQDILNEVVVALRRLSDER*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10008838

Overview

Ecosystem & Geography

Associated Families

Sequences