Scaffold Ga0114980_10008189

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10008189
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6818
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004546	Metagenome / Metatranscriptome	433	Y
F035757	Metagenome / Metatranscriptome	171	Y
F102562	Metagenome / Metatranscriptome	101	Y
F104427	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000818914	F000345	GGAG	MIEKQPNEFGKSLQDWWDSDDCKQLQKENEEVKQRAVGKYFMLSESDKLDMVQAICYIMCKAESEGTSHRGLQDALGIYPTGFWVDHLMEVHNALWSYYHDKKNKQELEQDVNNLKAFLENKNETPNESGDATGTN*
Ga0114980_1000818920	F000744	N/A	MTEVKKMTEDFVRLNVHEIGILLSALQTLSVSDERVIAKDYGSAPALYNKLHSIYEQMDRSTVELRYDLTPSF*
Ga0114980_1000818923	F104427	GGA	MNNEEIKSFIQAFGDFMEHFEAEELYYEGCKVYENHRAEARRIQEQEIEAKAAELEVTVDYYIAEFM*
Ga0114980_100081894	F102562	GAG	MTDEEFLKKTATRAANALHMPLGDIDPLKMLEMFSYLHILVGGDKELMIHWVNTHNKHLGYCPGAHLTDARMDDTLRYLDAMVEH*
Ga0114980_100081895	F035757	GGAG	MSKYAVVLSSLVDDATVSIQILVESEMTTEQLTTYYKCKSIAISDVYVEQL*
Ga0114980_100081898	F004546	GGAGG	MPKEEEFPYDQFPWKLMHKDGKDNKDTRKCYFQSEDHMKKHIERYNLKKKDYTISYKYE*