Scaffold Ga0114980_10008038

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10008038
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6886
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000803810	F072349	AGGCGG	MDKVLCYSCNKSKNELSLKKSVILPINLLLCKTCSDNKFEPRWTVILAGRQYGSDHVKEFISKKKYAGPDITASELLI*
Ga0114980_1000803811	F105192	N/A	MNIPLTEIIITLFAAAISGLLTAQFSARRSKKEKIERLAEKAHDKLLLEIKDLQIKLYQLEKDLNEWKDKYYEALQELIRVKAELEGTLLKLTHIEIHSDED*
Ga0114980_100080386	F066776	AGG	LLHLTEKGVEIFIKRSRTKIQESFWNNYDLVIWKKDSGGYTDLKGMYRKDAWGKAEKISVSREGIWKLPKRYVKYFK*