Scaffold Ga0114980_10007871

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10007871
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6965
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007644	Metagenome / Metatranscriptome	347	Y
F014250	Metagenome / Metatranscriptome	264	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000787111	F000450	AGGCGG	MGDRANFGFVQSNGETIVLYGHWAGHNMLGKLADAVIKARPRWNDESYATRIAISRLIGDEWNMETGWGLSVNNIQDNEHKIAVVDFKQQTFSLHEEDERNNLDNKVNGMKNDAIFTMDLSVFCEKYALEEILV*
Ga0114980_1000787113	F001043	AGGAG	MSDYRDGFDDGYKFAREEIIDKLREIDIADIDAFLLDRLSDMIEENKI*
Ga0114980_1000787114	F000311	GGA	MYFELTAPDRLSMEMAYWDAQITGLDPTAMTPLTFNIGTGSIEKVSRIRDKYNLKESYVSEYETTGY*
Ga0114980_1000787115	F000714	GAG	METTENVVPATYNSNLLVTYKVIRGYSDAEYATDKITTLEWDLHNGRQSQKTVGVLQGKIDTVKDIITEAYEDSEDKDTLRAIAEALSIELVREVEFTATVEVSGTYSYNILDSDYELDLDSEVTDALYVDSNNGNIQIGDTEVCHVREA*
Ga0114980_100078714	F004666	N/A	LKGDNQMATKREYLKSKGITVGVRGRFSGAAKVALAEAEKNGIKFTADVKTK*
Ga0114980_100078716	F014250	N/A	MRDINTDFHPRLQKLVDMGETGTNILHGELKNLMLEAEKQLELAQETEDNSGEAMDSMERTYWEGQMDALTEVYAMTYNLSFAINERTQKNEFNRTI*
Ga0114980_100078717	F007644	GGA	MTNLIEYMKLHLISLEQDLEMNPESINVIDIPGQIYATEHLLSVANDMMSS*
Ga0114980_100078718	F001460	GAGG	MLGYTENDLNRMINAVHDAKLFYLRTPSDLMDKTELRNDLEMANSFLQGLWAEGYFDHA*