Scaffold Ga0114980_10007716

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10007716
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7051
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002044	Metagenome / Metatranscriptome	599	Y
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F006539	Metagenome / Metatranscriptome	370	Y
F007469	Metagenome / Metatranscriptome	350	Y
F042333	Metagenome	158	Y
F046377	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100077161	F002044	N/A	SNNFPMANTRKPIKRKKINRRVVRQTPDPTKIDAHYIALHECYKAARKAGFTPEHAFWLMTEHKTFPDWVVGDGGIIPSIDPTDDEDDD*
Ga0114980_100077163	F046377	AGG	MYSQMVCGYVGSDMKIQIDLKAADFEQLWINSMEWMNNDWQKQADRFDPSPLFSWGYAYWFDNYAALKMAEGFLSSLGKNYATHSDENTGDWLILTNYASPCHLRKKLVNA*
Ga0114980_100077164	F006539	N/A	MIETTTGWLVLYSVLGYFIVWGIFSTIKENYGQTMYWRGRKDGYDMHRRITDAKRDQVFDYDKQN*
Ga0114980_100077166	F004599	GGAG	MMAFNLSEYEDVATLNKWFILNFPSGRSDISVISHDAVNGYILVQATLWRDSKDEQPCVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQIIEMALRKSFADDAKPTSEPTTWTVGDVAEALSTKPKQQECSHGLMILKEGTAKTGRPFYGYVCSAPKGQQCDAKWAVTAANGSWFFREEE*
Ga0114980_100077167	F007469	AGGAGG	MGKMIMIDGSGLTATFTDNGVIVEPSTIVCDTCNDDRLLHEGDLLRCYSCHSINRIP*
Ga0114980_100077168	F002162	GAGG	MLFLSFNQSDSIVPNYEYACDREGSSIVLDLPMQHEIPFCQVCGFELTRVFTAVPAIFKGTGWAGKSGQV*
Ga0114980_100077169	F042333	GAG	MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVQRCDQYGHWMFVDQPCHSCLLIASK*