Scaffold Ga0114980_10007610

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10007610
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7095
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F010673	Metagenome	300	Y
F085601	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000761013	F002227	N/A	MKLTIQSRDNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGTQILELIIEREDGDKLCPGTPDLETL*
Ga0114980_1000761015	F001964	GGAGG	MSRNLFAKPIYKVQLSGAIGWSDMKERIVSYRTVEFSSRKDAEKAARELNPGEYTQGRIRVVPVELSEDYDIYPVVERMSEKPKSI*
Ga0114980_100076107	F085601	N/A	MKYYVMQTALSSGSKPQLVHWSKSQGDAITYAQSQLDLWREVGVPNPPRYEVHYSGLRGSALWSSLD*
Ga0114980_100076109	F010673	N/A	MNPKLIPILERIIARDTVLSPFHADRLPQSALAYIRQNYRMDSFLSDEEQDLIEMLAPFADNIADSFREDESSDASKYYLFQDGSLWLSTNAYQSIWADARDFAVEILLPRMTLSRMDADLLRAIDMEDAVESVLADFYSSFAHILNRDCGIPYSDAREHWNAYARQLGDGAREEAELGGSQSGRKEGIRFASEYTVNA*