Scaffold Ga0114980_10007563

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10007563
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7113
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015600	Metagenome / Metatranscriptome	253	Y
F020910	Metagenome / Metatranscriptome	221	Y
F022197	Metagenome / Metatranscriptome	215	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000756311	F015600	GAGG	MMNTTLEPRLQKLIDMGESGTDILHGELKNLMLEAENDYIEIEKEEREGGYSDAMLSMDRTRAEGRMDALVEVYALTYQLAFAISDRIKNNEQ*
Ga0114980_100075636	F022197	AGGA	MTTETIEDPTMYADYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIQENVFLPELGEWHTK*
Ga0114980_100075638	F040623	AGAAGG	MKVKIAIEQIIDIDDAMSNDIGFELYGPPDMSTDDKVDYLINRFCEDIDTLVKYDEVRDQIQVEYIED*
Ga0114980_100075639	F020910	GAGG	MWSKYTFVCDPDECDALVEFTVRDDFGFPLGVVQMKCPCGRFLNYISYEEAYAPIITDVSKVTPRTVVKIDSNPYN*